MIMIC Code Repository

The MIMIC Code Repository, managed by the MIT Laboratory for Computational Physiology, is the definitive technical framework for processing and analyzing the Medical Information Mart for Intensive Care (MIMIC) databases. In 2026, it serves as the critical infrastructure for fine-tuning medical Large Language Models (LLMs) and validating clinical AI agents. The repository provides a massive library of SQL scripts (PostgreSQL, BigQuery), Python modules, and R packages designed to transform raw, de-identified electronic health records (EHR) into structured, analysis-ready datasets. Its architecture is built around modularity, allowing researchers to calculate complex clinical scores—such as SOFA, SAPS II, and OASIS—directly within the database layer. By providing standardized scripts for data cleaning, cohort selection, and feature engineering, it ensures that clinical AI benchmarks are reproducible across global research institutions. As the healthcare industry shifts toward evidence-based AI, this repository remains the primary bridge between raw hospital data and production-ready predictive models for mortality, sepsis, and resource allocation.