Kallyope
Deciphering the gut-brain axis through AI-driven drug discovery for transformative therapeutics.

The all-in-one bioinformatics platform for high-performance NGS data analysis and functional interpretation.
OmicsBox, developed by BioBam, is a robust end-to-end bioinformatics solution designed to bridge the gap between raw sequencing data and biological insight. Its technical architecture utilizes a modular, Java-based desktop client integrated with high-performance cloud computing resources (CloudBlast and CloudComputing) to handle compute-intensive tasks like assembly and mapping without local hardware constraints. By 2026, OmicsBox has solidified its position as the industry standard for researchers working with non-model organisms, offering a seamless GUI for complex pipelines including de novo assembly, differential gene expression, and pangenome construction. The platform integrates widely-accepted open-source algorithms—such as DESeq2, STAR, and Kraken—within a validated, user-friendly environment. Its competitive edge lies in the 'Blast2GO' legacy, providing the world's most cited functional annotation methodology. The platform's 2026 roadmap emphasizes multi-omics integration, allowing users to cross-reference transcriptomic fluctuations with metabolic pathways and proteomic data within a single project file, significantly reducing the bioinformatics bottleneck in academic and industrial biotech research.
A three-step process (Mapping, Annotation, Enrichment) that assigns Gene Ontology (GO) terms to unknown sequences.
Deciphering the gut-brain axis through AI-driven drug discovery for transformative therapeutics.
Accelerating drug discovery through an end-to-end generative AI pipeline for target identification, molecular design, and clinical trial prediction.
The industry-standard interactive visualization tool for integrated exploration of large-scale genomic datasets.
Unlocking the causal biology of disease through Gemini Digital Twins.
Verified feedback from the global deployment network.
Post queries, share implementation strategies, and help other users.
Offloads heavy alignment and assembly tasks to high-performance BioBam servers via encrypted API calls.
Module for determining core and accessory genomes across multiple bacterial strains.
Dedicated pipelines for Oxford Nanopore and PacBio data, including Canu and Flye assemblers.
Utilizes Kraken2 and Kaiju for rapid taxonomic classification of environmental samples.
Maps annotated sequences to KEGG pathways for metabolic reconstruction and visualization.
Native visualization of BAM/VCF files with track management and SNP highlighting.
Analyzing organisms without a reference genome to identify stress-response genes.
Registry Updated:2/7/2026
Identify enriched pathways with GSEA
Characterizing microbial diversity and functional potential in soil samples under different fertilizers.
Identifying unique virulence factors in a specific strain compared to a database.