Kallyope
Deciphering the gut-brain axis through AI-driven drug discovery for transformative therapeutics.
The industry-standard PyTorch reproduction of AlphaFold 2 for high-fidelity protein structure prediction and training.
OpenFold is a high-performance, PyTorch-based reproduction of DeepMind’s AlphaFold 2, developed by the AlQuraishi Lab and the OpenFold Consortium. As of 2026, it remains the definitive open-source platform for researchers who require not only inference but the ability to retrain or fine-tune protein folding models on proprietary datasets. Unlike the original AlphaFold 2 release, which was primarily optimized for inference via JAX, OpenFold provides a memory-efficient implementation using Triton kernels and DeepSpeed-inspired optimizations, making it accessible for institutions with standard GPU clusters. The architecture utilizes a highly optimized 'Evoformer' stack and a structure module that predicts 3D coordinates of all atoms in a protein. Its market position in 2026 is critical for 'private-cloud' drug discovery, where pharmaceutical entities use OpenFold to maintain data sovereignty while performing massive-scale virtual screening. It supports both monomer and multimer configurations, providing GDT_TS scores effectively identical to AlphaFold 2 while offering superior flexibility for experimental research in protein-protein interactions and enzyme design.
Uses FlashAttention-inspired optimizations to handle extremely long sequences without OOM (Out of Memory) errors.
Deciphering the gut-brain axis through AI-driven drug discovery for transformative therapeutics.
Accelerating drug discovery through an end-to-end generative AI pipeline for target identification, molecular design, and clinical trial prediction.
The industry-standard interactive visualization tool for integrated exploration of large-scale genomic datasets.
Unlocking the causal biology of disease through Gemini Digital Twins.
Verified feedback from the global deployment network.
Post queries, share implementation strategies, and help other users.
Includes the full training pipeline, including data loaders and loss functions used for the original model.
Custom kernels written in OpenAI's Triton for high-performance GPU operations.
Native support for predicting the quaternary structure of protein complexes.
Support for FP16 and BF16 inference modes.
Model weights are often distributed via the HF Hub for easy deployment.
Ability to inject custom MSAs from various sources like ColabFold or MMseqs2.
Identifying the 3D structure of a disease-related protein that has no existing X-ray crystallography data.
Registry Updated:2/7/2026
Modifying an enzyme to increase thermal stability without losing catalytic activity.
Designing antibodies that bind specifically to a viral spike protein.